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Ray assembler

Ray assembler

Name: Ray assembler

File size: 404mb

Language: English

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Ray -- Parallel genome assemblies for parallel DNA sequencing. Recent publication: Ray Meta: scalable de novo metagenome assembly and profiling. NAME Ray - assemble genomes in parallel using the message-passing interface Ray targets several applications: de novo genome assembly (with Ray. Ray assembler. Ray is a parallel de novo genome assembler that utilises the message-passing interface everywhere and is implemented using peer-to-peer.

Ray Meta is a massively distributed metagenome assembler that is coupled with Ray Communities, which profiles microbiomes based on. I would suggest asking just one question at a time for experiences of Ray assembler check the Seqanswers thread;. In this paper, we describe a parallel short-read assembler, called Ray, which has Reads are assembled by assemblers into larger sequences called contigs.

After few back and forth email exchanges, we realized that Ray is liked for two reasons - (i) distributed MPI-based assembly, (ii) longer contigs. Ray is suite of assemblers that includes: Ray (de novo assembly of single genomes), RayMeta (de novo assembly of metagenomes). Ray allows to reduce the number of contigs and the number of errors. It can serve as a basis to develop an assembler that can be of universal.


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